PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01023149001
Common NameLOC100264303, VIT_12s0035g01800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ARF
Protein Properties Length: 679aa    MW: 75389.1 Da    PI: 6.0284
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01023149001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.74e-22128228198
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++ +++a+++       +++    ++l+  d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   
  GSVIVT01023149001 128 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVAADLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL-- 215
                        99****************************964333..4459************************************************.. PP

                        SSSEE..EEEEE- CS
                 B3  86 grsefelvvkvfr 98 
                        + +++el+v+v+r
  GSVIVT01023149001 216 RGENGELRVGVRR 228
                        449999*****97 PP

2Auxin_resp107.71.3e-35254337183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdld.pvrWpnSkWrsLk 83 
                        a+ha+st++ F+v+Y+Pr+s+seF+v+++k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv d + ++ W +S+WrsLk
  GSVIVT01023149001 254 ASHAISTGTLFSVFYKPRTSRSEFIVSLNKYLEARNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGDKNtSSGWADSEWRSLK 337
                        789***************************************************************98651678********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.36E-43118257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-39125243IPR015300DNA-binding pseudobarrel domain
CDDcd100173.20E-20126228No hitNo description
SMARTSM010191.6E-20128230IPR003340B3 DNA binding domain
PROSITE profilePS5086311.18128230IPR003340B3 DNA binding domain
PfamPF023623.2E-20128228IPR003340B3 DNA binding domain
PfamPF065076.9E-34254337IPR010525Auxin response factor
PfamPF023091.1E-10550643IPR033389AUX/IAA domain
PROSITE profilePS5174527.793553646IPR000270PB1 domain
SuperFamilySSF542773.65E-12555630No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MALVASNYPS GGPHAGAPCD ALYKELWHAC AGPLVTVPRE GERVYYFPQG HMEQLEASTT  60
HQGLDQQMPS FNLPSKILCK VVHVQLRAEP ETDEVYAQVT LLPEPDQSEI TSPDPPLPEP  120
QRCTVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMS QQPPWQELVA ADLHGNEWHF  180
RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGENG ELRVGVRRLM RQLSNMPSSV  240
ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSRSEFIVS LNKYLEARNH KLSVGMRFKM  300
RFEGEEVPER RFSGTIVGVG DKNTSSGWAD SEWRSLKVQW DEPASIFRPE RVSAWELEPL  360
VAAAAPTNLQ PAQRNKRARP PVLPSATPDL SVLGMWKSSV ESPSGFPYCD PHRGRDLYPS  420
PKFSSITKTN SFSFSGNSSP AAVSSNSMYW SNRMETATES FAPAVNKESG EKRRDTGSGC  480
RLFGFQLLDN STLEETLPVL TVGEDQPVPS LDVESDQHSE PSNINRSDIP SVSCEPDKLS  540
LRSPQESQSR QIRSCTKVHM QGIAVGRAVD LTRFDRYEDL LKKLEEMFDI QGELCGLTSI  600
WQVVYTDDED DMMMVGDDPW LEFCSMVRKI FIYTAEEVKR LSPKIKLPAM EEIKPGKLDS  660
DVAVAGTDDQ SSVVGPGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldw_B0.033601355Auxin response factor 1
4ldw_A0.033601355Auxin response factor 1
4ldv_A0.033601355Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.10780.0fruit
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4760950.0AM476095.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X038396.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010657917.10.0PREDICTED: auxin response factor 1 isoform X2
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLD7TGL80.0D7TGL8_VITVI; Auxin response factor
STRINGVIT_12s0035g01800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.30.0auxin response factor 1